PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 362aa    MW: 40109.5 Da    PI: 7.341
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00401genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.82.8e-681172782154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..kskkqsalsstklssaes 96 
                 r+g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrer +ql++++++++++a  a+ a+kr+re   + + + ++s+  +++ +s
  AA31G00401 117 RQGGMNCQDCGNQAKKDCQHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLSSLQNSSSNAAaaASTAAKRHREGedHRDGNGTVSAGPVVNPNS 215
                 7899**************************************************999987766665344555566665444566677777777777777 PP

      DUF702  97 kkeletss...lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                 ++ le  s   lP+evss+avfrcvrvss+++  +eee+aYqtav+igGhvfkGiLy+qG+++
  AA31G00401 216 NSGLELVSqqnLPPEVSSPAVFRCVRVSSMEEdeDEEEFAYQTAVNIGGHVFKGILYNQGPDH 278
                 76665544456*******************98434566***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-64120277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.1E-28122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.8E-25227276IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAGFFYLGGR ENNNKQDHHH HQHQVDKSNY LYLYKDEIYN NNKGFEIWPQ QEQENEQEQQ  60
HHVSSTTTPT NFYSFGSSSS NNRSRSLYFN FHEQPLLRSS LGGGLNNGGG GGFTVTRQGG  120
MNCQDCGNQA KKDCQHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LSSLQNSSSN  180
AAAAASTAAK RHREGEDHRD GNGTVSAGPV VNPNSNSGLE LVSQQNLPPE VSSPAVFRCV  240
RVSSMEEDED EEEFAYQTAV NIGGHVFKGI LYNQGPDHNN HHYCYTSSSP TTMAETSQHN  300
HHLNLLASTA TNTTANAVET SAKRSVSNNN NNGLILEHNS SVYSASMNTY ISGTQFFPNP  360
RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064342e-60AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237542e-60AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAY8006202e-60AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247302e-60AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
GenBankCP0026842e-60CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889030.11e-138hypothetical protein ARALYDRAFT_476700
SwissprotQ9LQZ51e-139SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ41e-138D7KSQ4_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__1830__AT1G75520.11e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-81SHI-related sequence 5